Document comments on The Sword of Good - Less Wrong
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The modified people can be quite a bit smarter than you are too, so long as you can see their minds and modify them. Groves et al managed to mostly control the Manhattan project despite dozens of its scientists being smarter than any of their supervisors and many having communist sympathies. If he actually shared their earlier memories and could look inside their heads... There's a limit to control, you still won't control an adversarial super intelligence this way, but a friendly human who appreciates your need for power over them? I bet they can have a >50 IQ point advantage, maybe even >70. Schoolteachers control children who have 70 IQ points on them with the help of institutions.
It seems unrealistic to assume that we'll be able to literally read the intentions of the first upload; I'd think that we'd start out not knowing any more about them than we would about an organic person through external scanning.
You won't be able to evaluate their thoughts exactly, but there's a LOT that you should be able to tell about what a person is thinking if you can perfectly record all of their physiological reactions and every pattern of neural activation with perfect resolution, even with today's knowledge. Kock and Crick even found grandmother neurons, more or less.
I'd still expect it to be hard to tell the difference someone between thinking about or wanting to kill someone/take over the world and someone actually intending to. But I can imagine at least being able to reliably detect lies with that kind of information, so I'll defer to your knowledge of the subject.