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ctwardy comments on Argument Maps Improve Critical Thinking - Less Wrong
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Oddly enough, Twardy's research in philosophy (as opposed to philosophy education) is related to Pearlean counterfactuals. He worked somewhat with Lucas Hope on a tool called "Causal Reckoner".
See:
http://portal.acm.org/citation.cfm?id=1082172&dl=GUIDE&coll=GUIDE&CFID=49488126&CFTOKEN=18921351
And:
http://www.springerlink.com/content/30m8ac6uafkxu9k3/
However, my google-fu is not strong enough to find the software itself. Possibly contacting the various individuals involved would be necessary.
Luke Hope and Karl Axnick did most of the work on Causal Reckoner. I have used it, but I did very little to develop it. However, I believe it is GPL, so it could be posted.