Johnicholas comments on Case study: abuse of frequentist statistics - Less Wrong
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I liked Proofs and Refutations a lot too. However, I'm ashamed to admit I have no special knowledge of Lakatos. All I know about his philosophy of science stuff (which I believe is closely related) is from his Wikipedia page (and Feyerabend's). Gelman's slides made the analogy with Lakatos explicitly.