Johnicholas comments on Rationalist Fiction - Less Wrong
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Encyclopedia Brown is an especially bad example. Most of the mysteries he solves, he solves by knowing some piece of minor trivia which contradicts some off-hand statement of the criminal. This promotes "rationality" as "knowing a lot of facts", which is absolutely not what we're trying to promote here, and provides the wrong model of problem solving. Encyclopedia Brown is based on formal logic, not Bayesian probability.
I agree with your descriptions of the books. My point was that fiction celebrates various community values, and that some books celebrate rationalist values more than others.
Compare Encyclopedia Brown to Harry Potter. Both solve mysteries, but Harry Potter is explicitly skilled at sports and personal defense and explicitly incompetent at schoolwork.
If you require such specific rationality techniques as "Bayesian probability but not formal logic", your kids will not have many books to read.