I think your final (larger) paragraph is confusing, but your conclusion is correct. That Omega presents you with a counterfactual only provides evidence that Omega is a jerk, not that you chose incorrectly.
I am pretty sure that I have interpreted the problem wrongly and the confusingness of the paragraph is the result. (The only non-trivial interpretation which occured to me yesteday was that Omega is scanning a set of people and is changing actual answers of those who obtained "even" based on instructions given by those who obtained "odd", which was, in hindsight, quite absurd way to understand it.)
See also my last reply to Vladimir Nesov in this thread.
Consider the following thought experiment ("Counterfactual Calculation"):
Should you write "even" on the counterfactual test sheet, given that you're 99% sure that the answer is "even"?
This thought experiment contrasts "logical knowledge" (the usual kind) and "observational knowledge" (what you get when you look at a calculator display). The kind of knowledge you obtain by observing things is not like the kind of knowledge you obtain by thinking yourself. What is the difference (if there actually is a difference)? Why does observational knowledge work in your own possible worlds, but not in counterfactuals? How much of logical knowledge is like observational knowledge, and what are the conditions of its applicability? Can things that we consider "logical knowledge" fail to apply to some counterfactuals?
(Updateless analysis would say "observational knowledge is not knowledge" or that it's knowledge only in the sense that you should bet a certain way. This doesn't analyze the intuition of knowing the result after looking at a calculator display. There is a very salient sense in which the result becomes known, and the purpose of this thought experiment is to explore some of counterintuitive properties of such knowledge.)