If Omega doesn't tell you what premises he's using, then you will have some probability distribution over possible premises. However, that distribution, or the information that led to it, needs to be made explicit for the thought experiment to be useful.
If you assume that your prior is 50% that Omega's counterfactual is always different than yours and 50% that it is independent, then updating on the fact that the counterfactual is different in this case gives you a posterior of 99% always different and 1% independent. This means that there is a (99%)^2 + 0.5% chance that your answer is right, and a 1.49% chance that your answer is wrong.
Interestingly, since the question is about math rather than a feature of the world, your answer should be the same for real life and the counterfactual, meaning that if you know that the counterfactual calculator is right mod 2 99% of the time and independent of yours, you should be indifferent to righting "even" or "odd" on your real-life paper.
Good point, but I think the following is wrong: "Interestingly, since the question is about math rather than a feature of the world, your answer should be the same for real life and the counterfactual." This does not follow. The correct answer is the same, yes, but the best answer you can give depends on your state of knowledge, not on the unknown true answer. I would argue that you should give the best answer you can, since that's the only way to give an answer at all.
Consider the following thought experiment ("Counterfactual Calculation"):
Should you write "even" on the counterfactual test sheet, given that you're 99% sure that the answer is "even"?
This thought experiment contrasts "logical knowledge" (the usual kind) and "observational knowledge" (what you get when you look at a calculator display). The kind of knowledge you obtain by observing things is not like the kind of knowledge you obtain by thinking yourself. What is the difference (if there actually is a difference)? Why does observational knowledge work in your own possible worlds, but not in counterfactuals? How much of logical knowledge is like observational knowledge, and what are the conditions of its applicability? Can things that we consider "logical knowledge" fail to apply to some counterfactuals?
(Updateless analysis would say "observational knowledge is not knowledge" or that it's knowledge only in the sense that you should bet a certain way. This doesn't analyze the intuition of knowing the result after looking at a calculator display. There is a very salient sense in which the result becomes known, and the purpose of this thought experiment is to explore some of counterintuitive properties of such knowledge.)