JoshuaZ:

When dealing with the possibility of ideology influencing results one needs to be careful that one isn't engaging in projection based on one's own ideology influencing results. Otherwise this can turn into a fully general counter-argument.

That is true. The easy case is when clear ideological rifts can be seen even in the disputes among credentialed experts, as in economics. The much more difficult case is when there is a mainstream consensus that looks suspiciously ideological.

To use one of the possibly more amusing examples, look at Conservapedia's labeling of the complex numbers and the axiom of choice as products of liberal ideology.

This sounds like it's probably a hoax by hostile editors. It reminds me of the famous joke from Sokal's hoax paper in which he described the feminist implications of the axioms of equality and choice. Come to think of it, it might even be inspired directly by Sokal's joke.