Aurini comments on Research methods - Less Wrong
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No; ATC is completely computerized en-route, and heavily computerized at control towers. Directions given by voice are being transitioned to directions given via texts. I've done work for NASA in that area. (FAA uses NASA to do ATC research for historical reasons, basically as a way not to have to fire a bunch of people after the moon landings.)
I have seen the strips of paper for tracking flight plans... I don't remember if they still use those. I won't swear that they don't. But it wouldn't make any sense, as all that information is in the computer.
It is not, however, autonomous. There are still humans in the loop, which is a terrible safety hazard. Every year, air traffic controllers make over 10,000 errors serious enough to be logged and investigated. Of course, one mistake made by a computer is much more horrible and newsworthy than 10,000 comparable mistakes made by humans.
This recent video by Reason Magazine would disagree; it argues to let a private corporation control Air Traffic (as in Canada), instead of bowing to the Unions: http://www.youtube.com/watch?v=KaPvJlPnc6E
I'm just going by what Nick Gillespe is claiming, but I've found Reason to be honest in their reporting and generally critical in their thinking,