Another option:

• it's morally acceptable to terminate a conscious program if it wants to be terminated

• it's morally questionable(wrong, but to lesser degree) to terminate a conscious program against its will if it is also possible to resume execution

• it is horribly wrong to turn off a conscious program against its will if it cannot be resumed(murder fits this description currently)

• performing other operations on the program that it desires would likely be morally acceptable, unless the changes are socially unacceptable

• performing other operations on the program against its will is morally unacceptable to a variable degree (brainwashing fits in this category)

These seem rather intuitive to me, and for the most part I just extrapolated from what it is moral to do to a human. Conscious program refers here to one running on any system, including wetware, such that these apply to humans as well. I should note that I am in favor of euthanasia in many cases, in case that part causes confusion.