muflax comments on Spend Money on Ergonomics - Less Wrong
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Do note that portability is basically a non-issue. If you expect to spend one-twentieth of your typing time on other computers (an insanely high estimate even for a backwards company's "IT guy") and we pessimistically assume that learning a new layout will magically reduce your old layout skills to hunt-and-peck[1], the gain in speed only has to be something like 5 wpm before it drowns out the lost speed on old layouts.
[1]: This is not supported by my experiences; two of my close friends have remapped to Dvorak and their QWERTY skills only mildly deteriorated. None of the concerns you have raised have been a problem for them; although one thing that did happen is it became impossible for any of us QWERTY users to type on their computers (something they quite enjoy).
That basically happened to me. I've switched away from QWERTY in 2006 and really only ever use it if I fix something on my mother's computer. Previously I was typing at 80-90wpm, now I don't even know where the keys are anymore. I could maybe get back to 30wpm with a week of practice, but most of my QWERTY skill is gone.