We simply do not have a scientific process any more.
This is both unfair to scientists and inaccurate. In 2011, we've had such novel scientific discoveries as snails that can survive being eaten by birds, we've estimated the body temperature of dinosaurs, we've captured the most detailed picture of a dying star ever taken, and we've made small but significant progress to resolving P ?= NP. These are but a few of the highlights that happened to both be in my recent memory and which I could easily locate links to. I've also not included anything that could be argued to be engineering rather than science. There are many achievements just like this.
Why might it seem like we don't have a scientific process?
First, there's simple nostalgia. As I write this, the space shuttle is on its very last mission. I suspect that almost everyone here either longs for the days of their youth when humans walked on the moon, or wish they had lived then to witness that. Thus, the normal human nostalgia is wrapped up in some actual problems of stagnation and lack of funding. This creates a potential halo effect for the past.
Second, as the number of scientists increases over time, the number of scientists who are putting out poor science will increase. Similarly, the amount of stuff that gets through peer review even when it shouldn't will increase as the number of journals and the number of papers submitted goes up. So the amount of bad science will go up.
Third, the internet, and similar modern communication technologies lets us find out about so-called bad science much faster than we would otherwise. Much of that would get buried in obscure journals but instead we have bloggers commenting and respected scientists responding. So as time goes on, even if the amount of bad science stays constant, the perception would be of an increase.
I would go so far as to venture that we might have a more robust and widespread scientific process than at any other time in history. To put the Bem study in perspective, keep in mind that a hundred years ago, psychology wasn't even trying to use statistical methods; look at how Freud and Jung's ideas were viewed. Areas like sociology and psychology have if anything become more scientific over time. From that standpoint, a paper that uses statistics in a flawed fashion is indicative of how much progress the soft sciences have made in terms of being real sciences in that one needs bad stats to get bad ideas through rather than just anecdotal evidence.
To paraphrase someone speaking on a completely different issue, the arc of history is long, but it bends towards science.
To put the Bem study in perspective, keep in mind that a hundred years ago, psychology wasn't even trying to use statistical methods; look at how Freud and Jung's ideas were viewed. Areas like sociology and psychology have if anything become more scientific over time. From that standpoint, a paper that uses statistics in a flawed fashion is indicative of how much progress the soft sciences have made in terms of being real sciences in that one needs bad stats to get bad ideas through rather than just anecdotal evidence.
That's not really true. Experiment...
Related to: Parapsychology: the control group for science, Dealing with the high quantity of scientific error in medicine
Some of you may remember past Less Wrong discussion of the Daryl Bem study, which claimed to show precognition, and was published with much controversy in a top psychology journal, JPSP. The editors and reviewers explained their decision by saying that the paper was clearly written and used standard experimental and statistical methods so that their disbelief in it (driven by physics, the failure to show psi in the past, etc) was not appropriate grounds for rejection.
Because of all the attention received by the paper (unlike similar claims published in parapsychology journals) it elicited a fair amount of both critical review and attempted replication. Critics pointed out that the hypotheses were selected and switched around 'on the fly' during Bem's experiments, with the effect sizes declining with sample size (a strong signal of data mining). More importantly, Richard Wiseman established a registry for advance announcement of new Bem replication attempts.
A replication registry guards against publication bias, and at least 5 attempts were registered. As far as I can tell, at the time of this post the subsequent replications have, unsurprisingly, failed to replicate Bem's results.1 However, JPSP and the other high-end psychology journals refused to publish the results, citing standing policies of not publishing straight replications.
From the journals' point of view, this (common) policy makes sense: bold new claims will tend to be cited more and raise journal status (which depends on citations per article), even though this means most of the 'discoveries' they publish will be false despite their p-values. However, this means that overall the journals are giving career incentives for scientists to massage and mine their data for bogus results, but not to challenge bogus results by others. Alas.
1 A purported "successful replication" by a pro-psi researcher in Vienna turns out to be nothing of the kind. Rather, it is a study conducted in 2006 and retitled to take advantage of the attention on Bem's article, selectively pulled from the file drawer.
ETA: The wikipedia article on Daryl Bem makes an unsourced claim that one of the registered studies has replicated Bem.
ETA2: Samuel Moulton, who formerly worked with Bem, mentions an unpublished (no further details) failed replication of Bem's results conducted before Bem submitted his article (the failed replication was not mentioned in the article).
ETA3: There is mention of a variety of attempted replications at this blog post, with 6 failed replications, and 1 successful replication from a pro-psi researcher (not available online). It is based on this ($) New Scientist article.
ETA4: This large study performs an almost straight replication of Bem (same methods, same statistical tests, etc) and finds the effect vanishes.
ETA5: Apparently, the mentioned replication was again submitted to the British Journal of Psychology: