Ok, I better understand your objection now. I'm not sure that I see, however, why this objection wouldn't apply equally well to Eliezer and Michael Shermer (or anyone else) using the term "libertarian" to describe their views. (I take "libertarian" to mean "in favor of more liberty," more or less)
I have no idea what kind of libertarian Shermer is, but I know for sure that there are some kinds of libertarians who would take issue with the sort of libertarianism from Eliezer's self-description. Promoting the "wrong" kind of libertarianism in front of people who belong to either kind is not at all unlikely to lead to bitter and mind-killing ideological disputes.
The important difference however is that Eliezer's article presents his views in a reasonably non-confrontational way, whereas the article you linked is straight-out ideological warfare. The latter is much more likely to induce mind-killing.
A response essay written by Eliezer Yudkowsky posted at Cato Unbound for the issue Brain, Belief, and Politics:
Is That Your True Rejection? by Eliezer Yudkowsky
The lead essay has been written by Michael Shermer:
Liberty and Science by Michael Shermer