VincentYu comments on Get genotyped for free ( If your IQ is high enough) - Less Wrong

34 Post author: wallowinmaya 01 October 2011 04:00PM

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Comment author: VincentYu 07 April 2015 09:50:41AM 0 points [-]

Is there any chance your sequencing had greater than 4x coverage?

I don't know. How do I find out?

Comment author: rseiter 18 April 2015 01:17:48AM 0 points [-]

I think the VCF would tell you if you had it. Another possibility would be using a lower quality threshold for calling SNPs, but that seems unlikely.