Scientifically, I suggest most of psychology and psychiatry (I'm looking at you, Law & Order: SVU). In a similar vein is programming/hacking (e.g. 24, any crime drama).
Godel's incompleteness theorem
In popular culture? What misunderstandings of it have you seen?
Hmm, not popular culture. Certainly arguing with people purveying nonsense as a form of the argument "you can't be certain therefore I might be right."
I want to share the following explanations that I came across recently and which I enjoyed very much. I can't tell and don't suspect that they come close to an understanding of the original concepts but that they are so easy to grasp that it is worth the time if you don't already studied the extended formal versions of those concepts. In other words, by reading the following explanations your grasp of the matter will be less wrong than before but not necessarily correct.
World's shortest explanation of Gödel's theorem
by Raymond Smullyan, '5000 BC and Other Philosophical Fantasies' via Mark Dominus (ask me for the PDF of the book)
Mark Dominus further writes,
The Banach-Tarski Paradox
by MarkCC