gwern comments on Can the Chain Still Hold You? - Less Wrong
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Foucault would call it biopwer if you like that term better, but it is essentially breeding. The reason it is not as effective as a geneticist in their greenhouse is the scale. Even if a government has a policy of "fixing" hermaphrodites, the reality of actualizing that over a territory the size of a kingdom/country is almost impossible.
Is that a sufficient explanation why they haven't been completely wiped out? Check my facts on this, but I think about 1:3000 people is born not male or female.
...or it could just be that extremely complex systems like gender unavoidably go haywire during fetal development or a mutation hits, and this results in a normal background rate of around 1:3000?
Yes, that seems reasonable. There are four biologically possible scenarios I can think of to explain the numbers:
Four seems far and away the least likely; I'd be suspicious of an equilibrium that's so low, not only in our species but all our mammalian relatives. Perhaps there are answers in the literature; I don't have the time.