You could't apparate to Hogward in cannon, if I recall correctly?
Correct! You can't apparate into or out of Hogwarts. The ancient wards on the school have prevented this since its founding. The Floo network, on the other hand, works just fine, as has been demonstrated several times in HP:MoR and in canon. The Hogwarts wards can also be easily bypassed by the vanishing cabinet, phoenix teleportation, or portkeys. In HP:MoR, the use of portkeys can be blocked by wards like the ones on Azkaban (and presumably a handful of other ultra-high-security places, like Nurmengard).
While we're on the subject of easily-exploitable se...
(The HPMOR discussion thread after this one is here.)
This is a new thread to discuss Eliezer Yudkowsky's Harry Potter and the Methods of Rationality and anything related to it. There haven't been any chapters recently, but it looks like there are a bunch in the pipeline and the old thread is nearing 700 comments. The latest chapter as of 7th March 2012 is Ch. 77.
There is now a site dedicated to the story at hpmor.com, which is now the place to go to find the authors notes and all sorts of other goodies. AdeleneDawner has kept an archive of Author's Notes.
The first 5 discussion threads are on the main page under the harry_potter tag. Threads 6 and on (including this one) are in the discussion section using its separate tag system. Also: one, two, three, four, five, six, seven, eight, nine.
As a reminder, it's often useful to start your comment by indicating which chapter you are commenting on.
Spoiler Warning: this thread is full of spoilers. With few exceptions, spoilers for MOR and canon are fair game to post, without warning or rot13. More specifically: