Vaniver comments on Are the bacteria/parasites in your gut affecting your thinking? - Less Wrong
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It's not quite probiotic, but the bacteria in sourdough seriously reduce the negative effects of wheat gluten; apparently, bread fermentation was widespread across wheat-eating cultures.
You're right, but note that most store-bought sourdough breads are barely sourdough at all; they're mostly just flavored but don't undergo the traditional fermentation process which takes too long for bread corporations more interested in moving stock. Roman legions actually survived largely off of long-fermented sourdough bread.