Vaniver comments on Are the bacteria/parasites in your gut affecting your thinking? - Less Wrong
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Is eating an effective way to do that? In the world's cultures there's a wide variety of pro-biotic fermented foods. Do these exist merely because people like the taste? Surely they partly exist as a coping strategy for rotten food, but is that all? I doubt it. In some cultures they're eaten regularly. Let's list some:
Diet generally can dramatically affect which bacteria thrive in the gut (e.g. I recall evidence about sugar consumption, but can't find it). [I don't list bread or wine because as far as I know the agents are mostly dead before we eat them. For that matter, I'm not sure how much is alive in commercially available cheese.][Hygiene practices vary substantially too which probably has an important effect.]
It's not quite probiotic, but the bacteria in sourdough seriously reduce the negative effects of wheat gluten; apparently, bread fermentation was widespread across wheat-eating cultures.
You're right, but note that most store-bought sourdough breads are barely sourdough at all; they're mostly just flavored but don't undergo the traditional fermentation process which takes too long for bread corporations more interested in moving stock. Roman legions actually survived largely off of long-fermented sourdough bread.