mytyde comments on Are the bacteria/parasites in your gut affecting your thinking? - Less Wrong
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Is eating an effective way to do that? In the world's cultures there's a wide variety of pro-biotic fermented foods. Do these exist merely because people like the taste? Surely they partly exist as a coping strategy for rotten food, but is that all? I doubt it. In some cultures they're eaten regularly. Let's list some:
Diet generally can dramatically affect which bacteria thrive in the gut (e.g. I recall evidence about sugar consumption, but can't find it). [I don't list bread or wine because as far as I know the agents are mostly dead before we eat them. For that matter, I'm not sure how much is alive in commercially available cheese.][Hygiene practices vary substantially too which probably has an important effect.]
Cheese is one of the very few commercial foods you'll be able to find live (fermentation) bacteria living in, but even then many cheeses won't because the producers save expense by pasteurizing instead of more closely monitoring cheeses to make sure they don't develop molds.
But, there are a few companies who do sell high-quality raw fermented foods, like Real Pickles up here in New England. You'll be able to find healthy bacteria on organic farm-bought produce as well; sauerkraut can be made easily by putting some sliced cabbage in a jar with salt, pounding it down, topping off the jar with water, and capping it for a week.