It's worth noting that the actual enforcement of the norm-- downvoting of any comment remotely perceived as political-- is a dramatic enlargement of the recommendation actually made in that post.
I'm not saying that I think Overcoming Bias should be apolitical, or even that we should adopt Wikipedia's ideal of the Neutral Point of View. But try to resist getting in those good, solid digs if you can possibly avoid it. If your topic legitimately relates to attempts to ban evolution in school curricula, then go ahead and talk about it—but don't blame it explicitly on the whole Republican Party; some of your readers may be Republicans, and they may feel that the problem is a few rogues, not the entire party. As with Wikipedia's NPOV, it doesn't matter whether (you think) the Republican Party really is at fault. It's just better for the spiritual growth of the community to discuss the issue without invoking color politics.
Instead of merely downvoting the "good solid digs" and color politics people will downvote anything that even pattern matches with a contemporary policy issue. This, I would argue, actually exacerbates any political thinking because commenters then feel like they're being attacked and respond in kind.
Or is the convention against discussing politics here silly?
I propose a test. I'm going to try to lay down some rules on voting on comments for the test here (not that I can force anybody to abide by them):
1.) Top-level comments should introduce arguments (or ridicule me and/or this test); responses should be responses to those arguments.
2.) Upvote and downvote based on whether or not you find an argument convincing in the context in which it was raised. This means if it's a good argument against the argument it is responding to, not whether or not there's a good/obvious counterargument to it; if you have a good counterargument, raise it. If it's a convincing argument, and the counterargument is also convincing, upvote both. If both arguments are unconvincing, downvote both.
3.) Try not to downvote particular comments excessively, if they're legitimate lines of argument. A faulty line of argument provides opportunity for rebuttal, and so for our test has value even then; that is, I want some faulty lines of argument here. If you disagree, please downvote me, instead of the faulty comments, because this post is what you want less of, not those comments. This necessarily implies, for balance, that we not excessively upvote comments. I'd suggest fairly arbitrary limits of 3/-3?
Edit: 4.) A single argument per comment would be ideal; as MixedNuts points out here, it's otherwise hard to distinguish between one good and one bad argument, which makes the upvoting/downvoting difficult to evaluate. (My apologies about missing this, folks.)
I'm going to try really hard not to get personally involved, except to lay down a leading comment posing an argument against abortion, a position I don't hold, for the record. The core of the argument isn't disingenuous, and I hold that this argument is true, it just doesn't lead to my opposing abortion. I do not hold the moral axiom by which I extend the basic argument to argue against abortion, however; I'm playing the devil's advocate to try to help me from getting sucked into the argument while providing an initial point of discussion.
Which leads me to the next point: If you see a hole in an argument, even if it's an argument for a perspective you agree with, poke through it. The goal is to see whether we can have a constructive political argument here.
The fact that this is a test, and known to be a test, means this isn't a blind study. Uh, try to act as if you're not being tested?
After it's gone on a little while, if this post hasn't been hopelessly downvoted and ridiculed (and thus the premise and test discarded as undesirable to begin with), we can put up a poll to see whether people found the political debates helpful, not helpful, and so on.