I personally agree that creepiness could be a problem in this community, and was not offended by the article, but I don't see it as unreasonable defensiveness for someone to be offended by the implication that this is a significant problem in the absence of evidence.
This is an issue which, I suspect, a significant number of our members are very conscious of, and take pains to avoid. One effective way to offend people, indeed the way in which I have most recently personally been significantly offended, is lecturing them in the assumption that they're unaware of an error which they have actually gone to significant effort to correct.
Since this is a particularly touchy subject, it helps to take pains not to offend people. Maybe this article "just isn't" a personal attack, but then many creepy behaviors "just aren't" making inappropriate advances, but still set off the triggers of people who, after all, can only read behaviors, not intentions.
One of the lessons highlighted in the thread "Less Wrong NYC: Case Study of a Successful Rationalist Chapter" is Gender ratio matters.
There have recently been a number of articles addressing one social skills issue that might be affecting this, from the perspective of a geeky/sciencefiction community with similar attributes to LessWrong, and I want to link to these, not just so the people potentially causing problems get to read them, but also so everyone else knows the resource is there and has a name for the problem, which may facilitate wider discussion and make it easier for others to know when to point towards the resources those who would benefit by them.
However before I do, in the light of RedRobot's comment in the "Of Gender and Rationality" thread, I'd like to echo a sentiment from one of the articles, that people exhibiting this behaviour may be of any gender and may victimise upon any gender. And so, while it may be correlated with a particular gender, it is the behaviour that should be focused upon, and turning this thread into bashing of one gender (or defensiveness against perceived bashing) would be unhelpful.
Ok, disclaimers out of the way, here are the links:
Some of those raise deeper issues about rape culture and audience as enabler, but the TLDR summary is:
EDITED TO ADD:
Despite the way some of the links are framed as being addressed to creepers, this post is aimed at least as much at the community as a whole, intended to trigger a discussion on how the community should best go about handling such a problem once identified, with the TLDR being "set of restraints to place on someone who is burning the commons", rather that a complete description that guarantees that anyone who doesn't meet it isn't creepy. (Thank you to jsteinhardt for clearly verbalising the misinterpretation - for discussion see his reply to this post)