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Antisuji comments on What Are You Doing for Self-Quantification? - Less Wrong
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I track my weight when I work out and I'm near a scale, and I track my pulse rate when I remember to. I have a google docs form for each metric and a pretty little graph on each accompanying spreadsheet. I've been doing this for about 3 months.
Tagtime, mentioned in another comment, looks pretty cool and something I might look into at some point.