gwern comments on Causal Diagrams and Causal Models - Less Wrong
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I understand your suspicion, and I don't think you're being too harsh at all. Scepticism on this point is more likely to improve understanding, after all.
There are ways to measure fat independantly of weight, however. The electrical conductance of fat and muscle differs - you can get scales that will measure both your weight and your conductance, and present you with a figure describing what percentage of your body weight is due to fat. There's also a machine at my local gym that purports to measure body fat percentage (I'm not entirely sure how it works or how accurate it is), and I have found that if I fail to exercise over a long period of time, then the figure that it measures shows a general upwards trend.
Further reading: http://en.wikipedia.org/wiki/Body_fat_percentage#Measurement_techniques