Before the war, certainly. And even during, while Dumbledore was alive, Hogwarts was well enough protected that it probably wouldn't have been a good idea for the Death Eaters to try and get in by Floo, even assuming that they could.
The Potter Wiki says that the Floo Network is governed by the Floo Network Authority at the Ministry of Magic, which probably keeps tabs on who's connected where, so being connected to the Floo Network may be incompatible with trying to keep your location strictly secret.
Edit: New thread posted here.
This is a new thread to discuss Eliezer Yudkowsky’s Harry Potter and the Methods of Rationality and anything related to it. This thread is intended for discussing chapter 86. The previous thread has long passed 500 comments.
There is now a site dedicated to the story at hpmor.com, which is now the place to go to find the authors notes and all sorts of other goodies. AdeleneDawner has kept an archive of Author’s Notes. (This goes up to the notes for chapter 76, and is now not updating. The authors notes from chapter 77 onwards are on hpmor.com.)
The first 5 discussion threads are on the main page under the harry_potter tag. Threads 6 and on (including this one) are in the discussion section using its separate tag system. Also: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16.
As a reminder, it’s often useful to start your comment by indicating which chapter you are commenting on.
Spoiler Warning: this thread is full of spoilers. With few exceptions, spoilers for MOR and canon are fair game to post, without warning or rot13. More specifically: