can we put an upper bound on the length of proteins using evolutionary time scales?
Not really, most big proteins consist of 'domains' which fold up pretty independantly of each other (smaller proteins can vary quite a bit though). Titin is a ~30,000 amino acid protein in human muscle with ~500 repeats of the same 3 basic modules all laid out in a line... over evolutionary time you can shuffle these functional units around and make all kinds of interesting combinations.
Actually, the lab I'm working in recently had a problem with this. We optimized a gene to be read extremely fast by a ribosome while still producing exactly the same protein sequence (manipulating synonymous codons). But it turned out that when you have the actual protien molecule being extruded from the ribosome as rapidly as we had induced it to be, the normal independant folding of successive domains was disrupted - one domain didn't fully fold before the next domain started being extruded, they interacted, and the protein folded all wrong and didn't work despite having exactly the same sequence as the wild protein.
Summary: Intelligence Explosion Microeconomics (pdf) is 40,000 words taking some initial steps toward tackling the key quantitative issue in the intelligence explosion, "reinvestable returns on cognitive investments": what kind of returns can you get from an investment in cognition, can you reinvest it to make yourself even smarter, and does this process die out or blow up? This can be thought of as the compact and hopefully more coherent successor to the AI Foom Debate of a few years back.
(Sample idea you haven't heard before: The increase in hominid brain size over evolutionary time should be interpreted as evidence about increasing marginal fitness returns on brain size, presumably due to improved brain wiring algorithms; not as direct evidence about an intelligence scaling factor from brain size.)
I hope that the open problems posed therein inspire further work by economists or economically literate modelers, interested specifically in the intelligence explosion qua cognitive intelligence rather than non-cognitive 'technological acceleration'. MIRI has an intended-to-be-small-and-technical mailing list for such discussion. In case it's not clear from context, I (Yudkowsky) am the author of the paper.
Abstract:
The dedicated mailing list will be small and restricted to technical discussants.
This topic was originally intended to be a sequence in Open Problems in Friendly AI, but further work produced something compacted beyond where it could be easily broken up into subposts.
Outline of contents:
1: Introduces the basic questions and the key quantitative issue of sustained reinvestable returns on cognitive investments.
2: Discusses the basic language for talking about the intelligence explosion, and argues that we should pursue this project by looking for underlying microfoundations, not by pursuing analogies to allegedly similar historical events.
3: Goes into detail on what I see as the main arguments for a fast intelligence explosion, constituting the bulk of the paper with the following subsections:
4: A tentative methodology for formalizing theories of the intelligence explosion - a project of formalizing possible microfoundations and explicitly stating their alleged relation to historical experience, such that some possibilities can allegedly be falsified.
5: Which open sub-questions seem both high-value and possibly answerable.
6: Formally poses the Open Problem and mentions what it would take for MIRI itself to directly fund further work in this field.