Well, you can find a lot of magickal or Neopagan symbolism in The Matrix if you know how to look for it. The word "matrix" itself means "something motherly" in Latin, and its use in the movie could be viewed as a reference to the Great Mother Goddess. (More specifically, the Great Mother is actually one archetype of the feminine Great Goddess of Neopaganism.)
If it's worth saying, but not worth its own post (even in Discussion), then it goes here.