Autonomy is mostly a negative right -- it's a right to be free from interference and coercion.
Freedom is both a negative and a positive right -- it's the lack of restrictions (negative) but it's also the capability to do things (positive).
In that case, anything that a government (or any other external agent) does to decrease someone's freedom also decreases their autonomy, unless you want to redefine "interference" too. If you take away my capability to do things, you are interfering with me. Based on the examples you provided, it sounds to me like the difference between autonomy and freedom is that "autonomy" is an applause light, so limits to freedom that you approve of aren't limits to autonomy, but limits to freedom that you don't approve of are.
Do you think your behavior would change if you knew that every moment of your life was observed and recorded by government agents?
No. All the laws that I regularly break are laws that enough people regularly break that the police would very quickly give up even pretending to enforce them. Things that aren't illegal but I wouldn't want known would rarely end up exposed even if the surveillance system did not have well-designed protections for the surveyed, simply because the government agents involved wouldn't have time to keep track of and exploit everyone's embarrassing secrets.
Or, simpler, have you read 1984?
No, but I know what you are referring to. This is not an inevitable consequence of surveillance.
Selective enforcement of laws can be a huge problem. If for some reason a local cop decides he doesn't like you, having all your crimes recorded in advance will make retaliation much easier.
EDIT: added the "rights of parents" and "simulation hypothesis" research interests.
I've started a lot of research projects and have a lot of research interests that I don't currently have time to develop on my own. So I'm putting the research interests together on this page, and anyone can let me know if they're interested in doing any joint projects on these topics. This can range from coauthoring, to simply having a conversation about these and seeing where that goes.
The possible research topics are: