Personally, I remain confused about his claim that morality is objective in some sense in The Bedrock of Morality: Arbitrary?, no matter how many times i reread it.
I think it all boils down to this quote at the end (emphasis mine):
We are better than the Pebblesorters, because we care about sentient lives, and the Pebblesorters don't.
I agree with you that this claim is confusing (I am confused about it as well). I don't think, however, that he's trying to justify that it's objective. He's merely stating what it is and deferring the justification to a later time.
There seems to be a widespread impression that the metaethics sequence was not very successful as an explanation of Eliezer Yudkowsky's views. It even says so on the wiki. And frankly, I'm puzzled by this... hence the "apparently" in this post's title. When I read the metaethics sequence, it seemed to make perfect sense to me. I can think of a couple things that may have made me different from the average OB/LW reader in this regard: