This idea of calorie intake and expenditure being an epiphenomenon... Taubes certainly does say things that seem to suggest that, but what it would even mean for that to be true?
Calorie intake and expenditure are automatically regulated by the body, and in a healthy person, marginal increases or decreases in calorie intake will cause matching changes to both appetite and to energy expenditure, by changing body temperature, fidgeting, and other expendable metabolic processes. Large, forced decreases in calorie intake must cause either a balancing release of energy from fat cells, or a matching reduction in energy expenditure, but unfortunately, it's likely to be the latter. In that case, the energy expenditure comes from sacrificing metabolic processes that aren't really expendable, damaging health. Obesity can only occur if this regulatory process is broken somehow. It is more likely to be broken by a high-carbohydrate diet than by a high-fat diet. If it's broken in someone who's on a low-fat, high-carbohydrate diet, then switching to a high-fat low-carbohydrate diet is likely to fix it.
The previous paragraph is what I believe to be true. I don't know how well it lines up with what Taubes has said, but I don't care because Taubes is just a human. It does seem that he's failed to communicate it clearly, but if you're going to criticize him for that, the criticism should be delivered in the context of a clear restatement of the same position. If you're going to go around saying things that are incompatible with the previous, then please address it directly; everything you've said so far is at least one step removed, and it's frustrating because you keep saying things that aren't even wrong.
RETRACTED: THIS WAS BS.
Are you saying that at no point of our evolution did our ancestors benefit from gaining a little storage fat in a way that we inherited, and even if they did, the only way to use those stores would be damaging?
Previously: Mainstream Nutrition Science on Obesity
Edit: In retrospect, I think it maybe should have combined this post with part 3. Unfortunately, the problem of what to do with existing comments makes that hard to fix now.
Taubes first made a name for himself as a low-carb advocate in 2002 with a New York Times article titled "What if It's All Been a Big Fat Lie?" When I first read this article, I was getting extremely suspicious by the second paragraph (emphasis added):
It's one thing to claim that, all else equal, low-carb diets have advantages over low-fat diets. It's another thing to claim you can eat unlimited amounts of fatty foods without gaining weight.
I'd heard of Atkins before but didn't know much about him. I got curious to know more about the man Taubes was casting as the hero who just may have been "right all along," so I popped over to the Wikipedia article on the diet, which says:
The last sentence of this paragraph is helpfully marked "citation needed," leaving an unresolved conflict between whatever Wikipedia editor wrote the paragraph and what the Atkins folks (at least now) claim. I ordered a used copy of the original 1972 edition of Atkins' book through Amazon, and what I found supports the Wikipedia editor. The folks currently in charge of Atkins Nutritionals are white-washing.
The sensational "truly luxurious food without limit" quote in Taubes' article, for example, can be found on page 15 and comes with no context that would make it more reasonable. In fact, lest anyone misunderstand it, it's followed by a statement that "As long as you don't take in carbohydrates, you can eat any amount of this 'fattening' food and it won't put a single ounce of fat on you." (In the book, this is italicized for emphasis.)
Atkins acknowledged that most of the people who used his diet ended up eating less overall, but claimed that some of his patients had lost significant amounts of weight eating 3,000 calories per day or more. In one case, Atkins claimed, a man had lost fifty pounds on a diet of 5,000 calories per day. He attempted to explain this by invoking the fact that extremely low-carbohydrate diets will cause people to excrete ketones (which Atkins referred to as "incompletely burned calories") in their urine. However, as a statement on the Atkins diet put out by the American Medical Association explains:
As far as I can tell, nobody today defends Atkins' original "ketones in the urine" explanation for how his diet supposedly works. It's not entirely clear to me what was going on with the patients Atkins claimed lost weight on a high-calorie diet, but it wouldn't be surprising if a minority of his patients had simply misjudged their caloric intake. In spite of this, Taubes still appears to want to defend Atkins' most extreme claims about people being able to eat unlimited fat without gaining weight.
This isn't entirely obvious when you read his books Good Calories, Bad Calories or Why We Get Fat, which go for a slightly less sensational presentation than the Times article. Nevertheless, in the epilogue to Good Calories, Bad Calories, he claims that "Dietary fat, whether saturated or not, is not a cause of obesity, heart disease, or any other chronic disease of civilization." There's a sense in which that claim might be somewhat plausible, if he meant that it's total calories, not fat per se, that's the main culprit in all those problems. But Taubes also puts a lot of energy (no pun intended) into attacking the mainstream emphasis on calories.
Why We Get Fat, for example, contains claims such as:
No effect? That's a strong claim. And as we'll see in the next two posts, Taubes' evidence for this claim ends up consisting largely on a series of misrepresentations of mainstream nutrition science, which allow him to present his views as the only alternative once he's knocked down his straw men.