Eugine_Nier comments on Critiquing Gary Taubes, Part 3: Did the US Government Give Us Absurd Advice About Sugar? - Less Wrong
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It is orthogonal to your topic (Taubes and Obesity) but I think the more interesting case is the one linking saturated fat to heart disease.
There's a recent book called Death By Food Pyramid I found very interesting that discussed the evolution of dietary guidelines in the US and the reliabilty of the studies they were based on that I would like to see discussed here as well.