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DTX comments on Autism, or early isolation? - Less Wrong
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Alternative hypothesis 2
(At this point I should point out that I like your hypothesis, I just think it is not necessarily single-cause)
Satoshi Kanazawa's charmingly simple theory that general intelligence tends to suppress and displace most of your instincts. This means being smart pretty much automatically means being bad at a lot of things. The way I interpret it is that attention is a finite resource and you either pay attention to your analytical engine or your instincts or share it, but you cannot give full 100% attention to both. So if the analytical engine demands your attention the insticts shut up/down.
I have observed intelligent people being bad at the following instinctive things (not all of them, not in all of these):
Why these things? They largely involve plenty of "analytical engine" skill. I think I'm a pretty good singer, I was varsity basketball, had good enough balance and coordination to climb V6 before injuries, won the district-wide art show in high school three years in a row, fix all my own plumbing and fixed my lawn mower engine. My wife literally rebuilt her car's circuit board, which is maybe more up the typical geek alley, but if you can do that, or build a gaming platform from parts, you can rebuild a lawn mower engine. You got me on social skills, but I don't think that's universal for smart people so much as universal for people who use most of their socializing resources on the Internet. General intelligence doesn't have to mean "super focused on one thing." You might have to give 100% attention if you ever want to be Kobe Bryant or something, but you can be really good at a lot of things without being among the top two or three in the world at any of them.
Anecdata, but just as reference to get away from bragging, the guy who got the second highest SAT score at my high school is now a pro rugby player. My best friend from college, who scored pretty close to us, just won an Emmy for writing comedy television.