Tetronian comments on Configurations and Amplitude - Less Wrong
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Suppose you have one theory that is very intuitive and easy to explain to a 6 year old but strongly conflicts with all of the experimental evidence you've collected, and another theory that is very counterintuitive and bizarre-looking but is heavily supported by the evidence. Which is more likely to be true? The second one, of course--when intuition conflicts with strong evidence, it generally means that your intuitions are flawed.
That's essentially the situation we are in with respect to QM. It is clearly, obviously true given the evidence we've collected, and no amount of intuition can change that.