If the QM model actually describes some as-yet unobserved phenomena that is proposed to underly X, then it seems like it avoids Monkeymind's criticisms because there is actually something additional being posited to be happening, behind the scenes as it were.

There are probably more examples than I'm aware of, but as I pointed out in an earlier comment to Monkeymind, quantum entanglement, which was regarded as an extremely counterintuitive prediction, was predicted by quantum mechanical models well in advance of observation.

ETA: Bose-Einstein condensates also come to mind.