To be specific about Flanagan's points:
The foregoing is an example of what William James called the philosophy of "nothing but." Its practitioners can be counted upon to reduce any phenomenon, however mysterious, to: "O, that is nothing but (blah blah, quack quack)."
Discussed in several places on Overcoming Bias. In this sequence, mainly Quantum non-realism. But also Fake Reductionism and Angry Atoms.
Closer to home, Gell-Mann has recently opined that Bohr & Heisenberg "brainwashed" a generation of physicists into thinking QM was complete.
Quantum Non-Realism, If Many-Worlds Had Come First
"But where does yellow come in? he will say: In my picture not at all, but these kinds of vibrations, when they hit the retina of a healthy eye, give the person whose eye it is the sensation of yellow." (Schrodinger)
Where Physics Meets Experience
"It seems clear that the present quantum mechanics is not in its final form [...] I think it very likely, or at any rate quite possible, that in the long run Einstein will turn out to be correct." (Dirac)
Einstein was correct. Spooky Action at a Distance: The No-Communication Theorem
"Anyone dissatisfied with these ideas may feel free to assume that there are additional parameters not yet introduced into the theory which determine the individual event." (Born)
Bell's Theorem: No EPR "Reality".
I realize this is a long series, but in the name of all cute kittens, don't tell me what it doesn't address until you actually read it! For the love of Belldandy, Montressor! This is a medium-sized book we're dealing with, designed specifically to reveal quantum mechanics as non-mysterious! Does it really not occur to you that these points might be, oh, addressed?
This is one of several shortened indices into the Quantum Physics Sequence.
Hello! You may have been directed to this page because you said something along the lines of "Quantum physics shows that reality doesn't exist apart from our observation of it," or "Science has disproved the idea of an objective reality," or even just "Quantum physics is one of the great mysteries of modern science; no one understands how it works."
There was a time, roughly the first half-century after quantum physics was invented, when this was more or less true. Certainly, when quantum physics was just being discovered, scientists were very confused indeed! But time passed, and science moved on. If you're confused about a phenomenon, that's a fact about your own state of mind, not a fact about the phenomenon itself - there are mysterious questions, but not mysterious answers. Science eventually figured out what was going on, and why things looked so strange at first.
The series of posts indexed below will show you - not just tell you - what's really going on down there. To be honest, you're not going to be able to follow this if algebra scares you. But there won't be any calculus, either.
Some optional preliminaries you might want to read:
And here's the main sequence: