I'm confused too. But I really didn't take any liberties with my paraphrasing. Here's an exact EY quote, albeit from a deprecated essay:
any simple intelligence enhancement will be a net evolutionary disadvantage - if enhancing intelligence were a matter of a simple surgical procedure, it would have long ago occurred as a natural mutation.
This seems to be his most recent writing on the subject. In a comment on that post, he says that the formulation you refer to is "part of an even stranger phase of [his] earlier wild and reckless youth, age fifteen or thereabouts", so it probably doesn't make sense to argue against this as something that "Eliezer argues"; possibly better to just say something like "some have argued..." or show why it's an intuitively appealing idea and then argue that there are counterexamples.
Edit: For an in-depth discussion of precisely this topic, see Nick Bostrom and Anders Sandberg's 2008 paper "The Wisdom of Nature: An Evolutionary Heuristic for Human Enhancement", available as a pdf here. This post was written before reading the paper.
There doesn't seem to be a thread discussing Eliezer's short-short story X17. While I enjoyed the story, and agreed with most of its points, I disagree with one assertion in it (and he's said it elsewhere, too, so I'm pretty sure he believes it). Edit: The story was written over a decade ago. Eliezer seems to have at least partially recanted since then.
Eliezer argues that there can't possibly be a simple surgical procedure that dramatically increases human intelligence. Any physical effect it could have, he says, would necessarily have arisen before as a mutation. Since intelligence is highly beneficial in any environment, the mutation would spread throughout our population. Thus, evolution must have already plucked all the low-hanging fruit.
But I can think of quite a few reasons why this would not be the case. Indeed, my belief is that such a surgery almost certainly exists (but it might take a superhuman intelligence to invent it). Here are the possibilities that come to mind.