This is creepily similar to the plot of Kurt Vonnegut's novel Galapagos), published in 1985 (Homo floresiensis was discovered in 2003). In the novel, all of humanity dies out due to an epidemic, except for a small band of humans who get stranded on the Galapagos islands (reference to Darwin's voyage). Over the following millennia these humans evolve into aquatic mammals with much smaller brains.
What's the critical population size for the effect to occur? Does it imply that SF "generation ships" are doomed? How about isolated arcologies?
In the case of a generation ship, you can just use selective breeding to keep people intelligent.
So we say we know evolution is an alien god, which can do absolutely horrifying things to creatures. And surely we are aware that includes us, but how exactly does one internalize something like that? Something so at odds with default cultural intuitions. It may be just my mood tonight, but this short entry on the West Hunter (thanks Glados) blog really grabbed my attention and in a few short paragraphs on a hypothesis regarding the Hobbits of Flores utterly changed how I grok Eliezer's old post.
I have to break here to note that was the most awesome fact I have learned in some time.
That last sentence just struck me with utter horror.