Well... you know, this actually wasn't my idea and I'm not sure it would actually work, but playing devil's advocate here...
...anybody notice that Hermione's testimony contradicted itself? No; if they had, it would already have mattered.
...anybody notice that Hermione knew something she shouldn't at her age? No; she reads too much.
...anybody notice that Hermione knew something she shouldn't about Important Player In This Game? For instance, being able to mention what Voldemort looked like. It could be a subtle reference that Harry would have to point out because it flew under the radar. But it would really hurt Harry's relationship with Lucius.
...hey, notice how Hermione didn't know something Hermione should have known? It'd have to be subtle, but maybe if she mentioned uncertainty about something she should have known, it could do something...
Well, I don't know. Eliezer's got me stumped this time.
Harry didn't listen, and Harry is coming up with a suggestion next week. (Or in a few seconds, depending on your POV.) So this can't be relevant to that solution. So unless Harry's solution will fail, this altered-testimony thing should not exist.
EDIT: New discussion thread here.
This is a new thread to discuss Eliezer Yudkowsky's Harry Potter and the Methods of Rationality and anything related to it. With two chapters recently the previous thread has very quickly reached 500 comments. The latest chapter as of 17th March 2012 is Ch. 79.
There is now a site dedicated to the story at hpmor.com, which is now the place to go to find the authors notes and all sorts of other goodies. AdeleneDawner has kept an archive of Author's Notes. (This goes up to the notes for chapter 76, and is now not updating. The authors notes from chapter 77 onwards are on hpmor.com.)
The first 5 discussion threads are on the main page under the harry_potter tag. Threads 6 and on (including this one) are in the discussion section using its separate tag system. Also: one, two, three, four, five, six, seven, eight, nine, ten.
As a reminder, it's often useful to start your comment by indicating which chapter you are commenting on.
Spoiler Warning: this thread is full of spoilers. With few exceptions, spoilers for MOR and canon are fair game to post, without warning or rot13. More specifically: