I highly doubt that he would mess around with her body more than necessary. He knows that he doesn't yet have the knowledge or power to resurrect her, and any experimenting will have to be done when there isn't a limited time-frame to stop her body from deteriorating further.
My current best guess as to what happened in that room is that Harry spent a good deal of time transfiguring her body into an element so stable, that the atoms won't move around "too much" in the days/weeks/months/years he would need before being able to resurrect her. He then transfigured a replacement body from some dirt lying around.
It's also possible that he just transfigured her brain into this element and just left the rest of her body as it is.
Alternatively, he could have simply entered the room and watched the room for six hours, perhaps while random-walking. By doing so, he ensures that the only observer he needs to worry about himself, so that far-future Harry can plan a time travel trip in security.
This is a new thread to discuss Eliezer Yudkowsky’s Harry Potter and the Methods of Rationality and anything related to it. This thread is intended for discussing chapters 91 & 92 . The previous thread has passed 500 comments.
There is now a site dedicated to the story at hpmor.com, which is now the place to go to find the authors notes and all sorts of other goodies. AdeleneDawner has kept an archive of Author’s Notes. (This goes up to the notes for chapter 76, and is now not updating. The authors notes from chapter 77 onwards are on hpmor.com.)
The first 5 discussion threads are on the main page under the harry_potter tag. Threads 6 and on (including this one) are in the discussion section using its separate tag system. Also: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,18,19,20.
Spoiler Warning: this thread is full of spoilers. With few exceptions, spoilers for MOR and canon are fair game to post, without warning or rot13. More specifically: