kalium comments on How can I spend money to improve my life? - Less Wrong Discussion
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Mile for mile, biking is significantly more dangerous than taking a car (as is walking), though not as dangerous as riding a motorcycle. (See here, or here if you're willing to tolerate older data and worse formatting.) You're trading off for physical fitness, though, and the life expectancy gained from increased fitness -- especially if expressed in terms of QALYs -- generally outweighs that lost from increased accident risk.
This undoubtedly varies by location but I haven't been able to find any good data on how. The waters are also muddied a bit by the fact that bike advocacy organizations like to promulgate the life expectancy data without the accident data -- not that I can really blame them, statistical literacy being what it is.
SF in particular has been working hard on bike infrastructure improvements that should help with safety. Especially if your commute involves Folsom St.