If I'm being honest (and I do hope that that is what you asked for) then I'd like to mention that personally I didn't really enjoy the story above. The idea of self-aware characters sounds awesome, but I was a bit disturbed by the fact that the main character was named after Eliezer Yudkowsky. Making brilliant characters with nigh-impossible rationality skills is fine (and lots of fun to read!), but this seems to cross that subtle border between interesting fanfic and uncomfortable devotion. My did-I-just-join-a-cult-sensor is going off. I think changing the name of Harry Potter-Yudkowsky would be a good idea.
The above is a bit exaggerated, I'd still read the story and enjoy it if you kept the name. But the initial flinch was real.
"If you give George Lukács any taste at all, immediately become the Deathstar." — Old Klingon Proverb
(To be fair, the author was drunk.)
Next chapter: "Analyzing the Fuck out of an Owl"
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Criticism appreciated.