Historically, the hypothesis that the earth orbited the sun had the distasteful implications that we were not the center of the universe. Galileo was prosecuted for this belief and recanted it under threat. I am surprised that you think the distasteful implications for this belief were evidence that the earth did not in fact orbit the sun.
Historically the hypothesis that humans evolved from non-human animals had the distasteful implications that humans had not been created by god in his image and provided with immortal souls by god. I am surprised that you consider this distaste to be evidence that evolution is an incorrect theory of the origin of species, including our own.
This is a rationality message board, devoted to, among other things, listing the common mistakes that humans make in trying to determine the truth. I would have bet dollars against donuts that rejecting the truth of a hypothesis because its implications were distasteful would have been an obvious candidate for that list, and I would have apparently lost.
If you had reason to believe that the Earth is the center of the universe, the fact that orbiting the sun contradicts that is evidence against the Earth orbiting the sun. It is related to proof by contradiction; if your premises lead you to a contradictory conclusion, then one of your premises is bad. And if one of your premises is something in which you are justified in having extremely high confidence, such as "there is such a thing as murder", it's probably the other premise that needs to be discarded.
...I am surprised that you consider this
This thread is for asking any questions that might seem obvious, tangential, silly or what-have-you. Don't be shy, everyone has holes in their knowledge, though the fewer and the smaller we can make them, the better.
Please be respectful of other people's admitting ignorance and don't mock them for it, as they're doing a noble thing.
To any future monthly posters of SQ threads, please remember to add the "stupid_questions" tag.