gjm comments on Crazy Ideas Thread - Less Wrong Discussion
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How would they identify what's a mutation and what isn't? (Extreme rarity in the rest of the population?) The first few people to try doing this will most likely be quite unusual people; how confident could they be that any given unusual allele in their genome is a likely-deleterious mutation rather than something that makes them unusual in a valuable way?
Yes you eliminate extremely rare mutations.
This is a risk.