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ChristianKl comments on Prediction challenge: Zika and birth rates - Less Wrong Discussion
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Most mosquito species don't pray on humans. For anti-disease and anti-annoyance practice we would only need to kill those mosquito species that bite humans.
In additional humanity likely killed a few species with DDT that was used against mosquitos. I think it's plausible that the world loses less species if we would remove the mosquitos that bite humans.