Exactly. There is no difference; either way you should not smoke.
Also, what do you mean by saying that there is "counterfactual dependence" in one case and not in the other? Do you disagree with my previous comment? Do you think that I would have had the lesion no matter what I decided, in a situation where having the lesion has a 100% chance of causing smoking?
So you're not just arguing with Eliezer, you're arguing with the entirety of causal decision theory.
I strongly suspect you don't understand causal decision theory at this point, or counterfactuals as used by it. If this is the case, see https://en.wikipedia.org/wiki/Causal_decision_theory, or http://lesswrong.com/lw/164/timeless_decision_theory_and_metacircular/, or https://wiki.lesswrong.com/wiki/Causal_Decision_Theory
Those links explain it better than I can quickly, but I'll try anyway: counterfactuals ask "if you reached into the universe from out...
You're given the option to torture everyone in the universe, or inflict a dust speck on everyone in the universe. Either you are the only one in the universe, or there are 3^^^3 perfect copies of you (far enough apart that you will never meet.) In the latter case, all copies of you are chosen, and all make the same choice. (Edit: if they choose specks, each person gets one dust speck. This was not meant to be ambiguous.)
As it happens, a perfect and truthful predictor has declared that you will choose torture iff you are alone.
What do you do?
How does your answer change if the predictor made the copies of you conditional on their prediction?
How does your answer change if, in addition to that, you're told you are the original?