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Dr_Manhattan comments on Now is the time to eliminate mosquitoes - Less Wrong Discussion
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I agree figuring out whether this might collapse ecosystems is important, (and what this collapse would entail, it would probably go beyond mosquitos and lead to some species rebalancing, but pretty darn sure not "destroy everything" either)
There are mosquito populations that you shouldn't try to exterminate, because they are important to their ecosystem. If you get rid of them a bunch of birds have no food and so they are gone too etc. But they are up here in the arctic. Getting rid of all the tropical mosquitoes is good for everyone and does not have any great effects on any ecosystem. Everyone that eats mosquitoes there also has other insects that they prefer to eat.
There's about 3200 species of mosquito. < 200 bite humans and perhaps a dozen are major disease vectors for humans.
We extinct about 150 species per day without really trying. Increasing the number of species we push to extinction by 10% for a single day would save half a million lives per year.
These are important comparisons.