"'Rationality gives us a better understanding of the world, except when it does not"
I provided this as an exaggerated example of how aiming for absolute truth can mean that you produce an ideology that is hard to explain. More realistically, someone would write something along the lines of, rationality gives us a better understanding of the world, except in cases a), b), c)... but if there are enough of these cases and these cases are complex enough, then in practise people round it off to "X is true, except when it is not", ie. they don't really understand what is going on as you've pointed out.
The point was that there are advantages of creating a self-conscious ideology that isn't literally true, but has known flaws, such as it becoming much easier to actually explain so that people don't end up being confused as above.
In other words, as far as I can tell, it doesn't seem that your comment isn't really responding to what I wrote.
Operating outside of ideology is extremely hard, if not impossible. Even groups that see themselves as non-ideological, still seem to end up operating within an ideology of some sort.
Take for example Less Wrong. It seems to operate within a few assumptions:
...
These assumptions are also subject to some criticisms. Here's one criticism for each of the previous points:
I could continue discussing assumptions and possible criticisms, but that would be a distraction from the core point, which is that there are advantages to having a concrete ideology that is aware of it's own limitations, as opposed to an implicit ideology that is beyond all criticism.
Self-conscious ideologies also have other advantages: