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TeMPOraL comments on Causal Universes - LessWrong
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The alternate way of computing this is to not actually discard the future, but to split it off to a separate timeline so that you now have two simulations: one that proceeds normally aside for the time-traveler having disappeared from the world, and one that's been restarted from an earlier date with the addition of the time traveler. Of course, this has its own moral dilemmas as well - such as the fact that you're as good as dead for your loved ones in the timeline that you just left - but generally smaller than erasing a universe entirely.
Or maybe also another one, somewhat related to the main post - let the universe compute, in it's own meta-time, a fixed point [0] of reality (that is, the whole of time between the start and the destination of time travel gets recomputed into a form that allowed it to be internally consistent) and continue from there. You could imagine the universe computer simulating casually the same period of time again and again until a fixed point is reached, just like the iterative algorithms used to find it for functions.
[0] - http://en.wikipedia.org/wiki/Fixed_point_(mathematics)