I'm not seeing it. To me, it seems like you're going to lengths to construe his writing in a way that you can take offense to. I don't actually think you are doing so, but your reframing is so distant from the tone I perceive that I can't understand what you are doing.

I read it as suggesting, in a fairly humble if flowery tone, that a number of other ancestral urges have been coopted for things that are demonstrably not in our best interest, and that desire for punishment is potentially on the same level. It's a suggestion worth investigating, in my view.

Or do you think that discouraging someone from drinking sugary sodas is on the same level? That could explain the disconnect.