Neural Correlates of Conscious Access
Summary: Neuroimaging scans and EEG readings comparing nonconscious and conscious stimuli are compared, showing particular patterns in conscious processes. These findings are in line with predictions made by the Global Workspace Theory of consciousness, in which consciousness is closely related to interaction between specialized modules of the brain.
When a bunch of photons hit your eye, it unleashes a long chain of cause and effect that leads to an image being mapped in your brain. When does that image become conscious?
Merikle et al performed experiments in the 80s which helped to resolve this question. In the Stroop task, people are asked to read words written in a different color than the word. Words written in their color (green) are easier to read than those not in their color (also red). Merikle modified the stroop task, using only two colors (red and green), and using the word to prime subjects to describe the color. As was expected, when "green" comes before a green square, subjects respond faster than with no priming.
However, when the situation is regularly reversed and the "red" prime normally comes before a green square (and vice versa) people also respond faster to similar levels. That is to say, subjects are able to notice that the prime and stimulus are incongruent, and act on that information to respond faster to the stimuli.
When the reversed prime ("red" before green) is flashed for such a short time span that people don't report seeing it, they are unable to use this information to react faster to the green stimulus, and the typical Stroop effect is observed -- being subliminally primed with a congruent color speeds up recognition, being subliminally primed with an incongruent color slows it.

- Mask a stimulus, by presenting it close in time to other unrelated or interfering stimuli. (i.e. a word flashed for 33 ms is noticeable by itself, but not when proceeded and followed by geometric shapes)2,3
- Use dichoptic masking, where you present two different images to each eye, and the subject reports seeing something which is neither of those4
- Use flash suppression, where you show one eye an image and flash shapes in the other eye to interfere with image perception5
- Use inattentional blindness, where you present something that participants aren't focusing on.
- Distract them! Present another stimulus and then quickly follow it with the one that you're interested in presenting preconsciously during their attentional blink.6

The idea that conscious access is related to recurrent processing in the frontoparietal region stands up to experimental verification. Researchers are able to interfere with conscious reports of information independently of stimulus identification simply by applying transcranial magnetic stimulation to the prefrontal cortex, without changing the stimulus.8
Notes
A huge thanks to John Salvatier for getting me a bunch of the papers and editing feedback and putting up with my previous attempts to write an article like this. Also thanks to mtaran, falenas108, and RS (you don't know him) for reading drafts of this article.
Images are from Zeki 2003 and Dehaene 2011, respectively. I'd be very happy if someone helped me format that to show up with the pictures.
1Merikle & Joordens, 1997
2Dehaene, S., & Changeux, J.-P. 2011
3Breitmeyer & Ogmen, 2007
4Moutoussis & Zeki 2002, Image from Zeki 2003
5Tsuchiya & Koch
6Marti et al 2010
7Lamme 2006
8Rounis et al 2010
9Baars 1997
10Metzinger
References
Baars, B. (1997). In the Theatre of Consciousness: The Workplace of the Mind. New York: Oxford University Press. Retrieved from here
Bruno G. Breitmeyer and Haluk Ogmen (2007) Visual masking. Scholarpedia, 2(7):3330
Dehaene, S., & Changeux, J.-P. (2011). Experimental and theoretical approaches to conscious processing. Neuron, 70(2), 200-27. Elsevier Inc. doi:10.1016/j.neuron.2011.03.018
Kouider, S., & Dehaene, S. (2007). Levels of processing during non-conscious perception: a critical review of visual masking. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 362(1481), 857-75. doi:10.1098/rstb.2007.2093
Lamme, V. A. F. (2006). Towards a true neural stance on consciousness. Trends in Cognitive Sciences, 10(11). doi:10.1016/j.tics.2006.09.001
Merikle, P. M., & Joordens, S. (1997). Parallels between perception without attention and perception without awareness.Consciousness and cognition, 6(2-3), 219-36. doi:10.1006/ccog.1997.0310
Lamme, V. A. F. (2006). Towards a true neural stance on consciousness. Trends in Cognitive Sciences, 10(11). doi:10.1016/j.tics.2006.09.001
Lau, H., & Rosenthal, D. (2011). Empirical support for higher-order theories of conscious awareness. Trends in cognitive sciences, 15(8), 365-373. doi:10.1016/j.tics.2011.05.009
Marti, S., Sackur, J., Sigman, M., & Dehaene, S. (2010). Mapping introspection’s blind spot: reconstruction of dual-task phenomenology using quantified introspection. Cognition, 115(2), 303-13. Elsevier B.V. doi:10.1016/j.cognition.2010.01.003
Metzinger, T. (2003). Being No One. Philosophy, 699. MIT Press.
Moutoussis, K., & Zeki, S. (2002). The relationship between cortical activation and perception investigated with invisible stimuli. Proceedings of the National Academy of Sciences, 99(14), 9527. National Acad Sciences. doi:10.1073/pnas.PNAS
Rounis, E., Maniscalco, B., Rothwell, J., Passingham, R., & Lau, H. (2010). Theta-burst transcranial magnetic stimulation to the prefrontal cortex impairs metacognitive visual awareness. Cognitive Neuroscience, 1(3), 165-175. doi:10.1080/17588921003632529
Tsuchiya, N., & Koch, C. (2005). Continuous flash suppression reduces negative afterimages. Nature neuroscience, 8(8), 1096-101. doi:10.1038/nn1500
Zeki, S. (2003). The disunity of consciousness. Trends in Cognitive Sciences, 7(5), 214-218. doi:10.1016/S1364-6613(03)00081-0
Blindsight and Consciousness
Thomas Metzinger is a philosopher who pays lots of attention to cognitive science and psychology, and likes to think about consciousness. Most of the interesting ideas that follow come from his books The Ego Tunnel and Being No One. I hope to write a series of posts summarizing some of the evidence and arguments in Being No One, which focuses on consciousness.
Blindsight1
Blindsight patients have damage to their primary visual cortex (V1), leading to a scotoma, or area of blindsight in the visual field. Most but not all visual signals go through V1, so they can still influence the brain in very restricted channels. Blindsight patients don't report seeing things in their scotoma, and don't initiate plans based on it. If they're thirsty and there's a bottle of water in their scotoma, they don't pick it up and drink it.
Human subjects and animal subjects are treated differently in psychological experiments regarding what they do and don't know. Humans are generally asked to report on their own experience, while animal actions are observed. We get interesting results when we ask people to report on their experience, while also observing their actions.
If you ask a blindsight patient what they see in their scotoma, they respond to the point that they can't see anything there. However, if you tell them to do things like "grab the thing in your scomata" they can grasp it. If you ask them to guess what's in it, they can perform better than chance. Some blindsight patients can tell if something is moving in their scotoma, but they can't tell you what it is. They often describe this awareness as a hunch.
Most people consider it fair to say that blindsight patients are not conscious of the things in their scotoma.
Attention and Conscious Experience
Patients with blindsight can act on visual information in their scotomas in some ways, but they can't notice it.
Metzinger argues that humans don't have a conscious experience of what we can't pay attention to. Note: There's a difference between can't pay attention to, and not currently paying attention to.
Visual information in the scotoma isn't accessible to the parts of my brain that plan, or the parts that cause me to say "I can see X". My unconscious is able to refer to this information for things in forced choice situations, but the information isn't available to me.
Constraints on Theories of Consciousness
Any theory which says that you need to be conscious in order to do things is probably wrong. Also, robots work. And machine learning exists. See also unconscious goals.
It's possible for your brain to refer to something, but not have it be consciously available to you. It's also possible to change what these things are.
The parts of your brain causing you to say that you notice something can be cut off from the parts that let you do things. This implies that some neural processes lead to you being conscious and others don't, and that those processes can be interrupted without ruining everything.
Citations, Notes:
1"The Case of Blindsight" by Weiskrantz in the Blackwell Companion to Consciousness (you can get it here, though there are other place on the internet that talk about blindsight)
Heavily drawn from The Ego Tunnel and Being No One (both by Metzinger).
Thanks to John Salvatier for reviewing drafts of this post.
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