I'd like to give an updated version of my thinking about the Night of Godric's Hollow:

1) The official story requires Avada Kedavra to behave in very funny ways against a love shield (a normally invisible kill turning a body into a burnt crisp.) Furthermore, as far as I can tell, the only way it can be known to be true is if someone cast prior incantum on Voldemort's wand. Which seems unlikely, because Bellatrix snatched it (See Ch. 53).

2) This indicates the good guys are lying or deceived. Possible reasons

a) Godric's Hollow was a trap laid by the good guys, who don't want to reveal their methods, so they made up a story about how it happened to fool the Death Eaters. Unlikely, because if they had, they probably would have prevented Bellatrix from getting Voldemort's wand.

b) Voldemort faked his death. The good guys showed up, noticed they were confused, and figured Voldemort had just executed some inscrutable plot. They make up a story to prevent a panic.

c) Voldemort faked his death. Bellatrix switched a look-alike wand that had, recently, only been used to cast Avada Kedavra, fooling the good guys.

"Voldemort faked his death" is also supported by what we know of his intelligence.

The question is why did Voldemort fake his death? Everything we know about Eliezer's philosophy in this story suggests Voldemort should not have tried a plot that was more complicated than necessary. And it doesn't seem like this plot is necessary. The evidence we have indicates Voldemort was winning the war. So thus far, no theory I've seen for why he would do that looks convincing.

But perhaps, contrary to what we've been led to believe, Voldemort realized he would not win the war if he kept fighting it in a straightforward manner?

Bunch of reactions to the new chapter:
I sort-of guessed the solution! * squee * I don't usually like to speculate on what's going to happen in works of fiction, because if I'm wrong I'm embarassed and if I'm right it lessons the surprise. But I had fun speculating and the chapter still had me on the edge of my seat with the tennis match of negotiations. Professor McGonagall is so damn awesome.
The bit with the dementor was hilarious, but I don't really understand this section:

The Dementors are Death, and the Patronus Charm works by thinking about happy thoughts instead of Death.

If Harry's theory was correct, that one sentence would be all it took to pop the Aurors' Patronus Charms like a soap bubble, and ensure that nobody within reach of his voice could cast another one.

Why, even if Harry's theory was true, would the animal patronuses not work once people know the truth? Even when you know death is bad, you can still think about other things.

What happened here?

The Veritaserum was brought in then, and Hermione looked for a brief moment like she was about to sob, she was looking at Harry - no, at Professor McGonagall - and Professor McGonagall was mouthing words that Harry couldn't make out from his angle. Then Hermione swallowed three drops of Veritaserum and her face grew slack.

It says nothing about disabling anyone's defenses against Dementors; it is a fait accompli, where Harry simply states that anti-dementor spells now exist and are being actively deployed. The Wizengamot can disable him if they want, but it will not change the situation (unless they know Harry is bluffing.)

And why disable one of the few wizards who -can- actually combat the dementors? The only reason the ministry used them in the first place was because there was no way to destroy them.

The best solution I've been able to come up with on my own involves Harry breaking the compact between the dementors and the ministry:

"I am not yet done!

Lucius, while I appreciate you desire for vengeance, pointing it at the wrong target gains you nothing. However, it does inconvenience me. Hermione Granger is mine. I have claimed her, and I will have her, healthy and with her magical abilities intact.

Dementor! The compact you have made with the Ministry has been broken. I have already begun teaching the charm which was used to destroy one of your kind at Hogwarts earlier this year. You will return immediately to Azkaban and tell the other dementors to leave that place. Should any of you wish to side with the ministry, be certain that we will destroy you all. Go, now."

[dementor leaves]

"We are now at war. The spell to destroy dementors does in fact exist, a fact Albus Dumbledoor will verify. However, it is powerful, and can only be cast by very few wizards, wizards of a particular mind. Those who learn of it and fail will be permanently robbed of their patronus.

Hermione is one of the few wizards who can learn to cast the spell, and we all need her with her magical abilities intact.

Lucius, I may also need Draco, should he choose to side with me. As he is my friend, I will find who is responsible for this attempt on his life regardless of what has happened here today. As you have shown such devotion to him, I will not withhold anything I find from you.

I expect Miss Granger to be freed and returned to Hogwarts within the hour.

Professor, let us return."

This puts Harry in a position of power, where only he and his select crowd can destroy the dementors, with sufficient proof for the wizengamot to believe him. Breaking the deal between the dementors and the ministry drains Azkaban of its potency for punishing Hermione, and house Potter has claimed Hermione; but Harry has also offered to house Malfoy the dual olive branches of an unconditional offer to find the real perpetrator, and elevating Draco to a protected position of power in Harry's future hierarchy, which clearly does not involve the Ministry.

Should Lucius press Hermione to Azkaban regardless, it would be a hollow victory and serve only to piss off Harry. Harry has already demonstrated stronger control over the dementors than the Ministry, and can simply elect to send them to Malfoy Manor if he is sufficiently irritated.

The only down side is that I don't see a really good political escape for Lucius. There are a handful of minor ones that Lucius could use, for example his Imperius debt:

"In deference to the Noble House Potter and the blood debt owed it by House Malfoy, I rescind the order sentencing Miss Granger to Azkaban. I trust Lord Potter and my son to ensure that her debt is paid in full. I propose we remand Miss Granger to Hogwarts and discuss this more serious matter of the dementors."

Chapter 72:

Did whatever Snape was planning for Rianne to do already happen?

There is his weird clap in the great hall, and his smile after chiding Jaime Astorga. Apparently he warned Jaime and others that morning, perhaps he anticipated them reacting in this particular way and be beaten by the girls? Why? And it seems the fight was fairly close run, so he shouldn't have been able to predict the result unless he just got lucky (or relied on future information). Perhaps he planned for either outcome, but what is he even trying to accomplish?

And how does Rianne fit into everything? Did she do something to influence Jaime or cast the jinx on Hermione (why?), or is her part still to come? And why does she need to be memory-charmed? The stakes don't seem to be high enough to require something like that, unless this whole plot is part of something greater (if it was just a high cost of his allies (either group) learning about it why should he take such a risk in the first place?).

ARRR!!! I just started going to the New York Rationality group, and next week when they're doing an actual HP:MOR meetup, I'm going to be in.... San Francisco, of all places.

Don't supposed the meetup could be Sunday....?

The alarming thing about being tested isn't that they tested Harry specifically; it is that they were aware that tests needed to be performed at all. Had the plan gone successfully, nobody would have ever have known that Bellatrix was removed. Remember that the entire advantage of Patronus 2.0 (to Quirrell) was the undetectable nature of it. It allowed a person to commit a perfect crime without the guards or dementors being aware that a crime ever occurred.

From the point of view of Harry, sitting with his invisibility cloak in the empty room at 3:00 PM, only a small number of possible futures could exist:

No note - Either the plan will go successfully, Harry shall be captured/killed in the attempt, or they abort for some other reason.

Do not mess with time note - This also should result in aborting the mission since some terrible paradox occurred and you DO NOT mess with time.

Passcode note - Harry will not be apprehended, but the plan will fail in some way and Harry is a suspect. Or Harry will chose to abort the mission and send back a false passcode preserve a stable time-loop. This is the result that actually occurred and is the only one that confirms a definite partial failure.

I admit it is possible that, once the message was sent back in time, Harry and Quirrell were committed via fate to perform the prison break. The problem is that both Harry and Quirrell act as if No Note was received. In the TPSE chapters, we do not see characters who are aware that their plan will be detected. They do not seem to act as if their plan is definitely going to partially fail. Neither does Harry take heart in nor mention the fact that he has already survived escaping Azkaban. Contrast with the same situation in cannon!PrisonerofAzkaban where it is a major plot point.

Edit: There is the possibility it is related to "Azkaban's future cannot interact with it's past", but then you run into the problem of Harry being able to send the note at all. If they abort or are just more paranoid on their mission, Azkaban's future is still effecting its the past either way.

If you heard that someone had had his brain removed, would you then be surprised if his head looked a mess?)

No.

However, the brain is a physical object. The soul is not. This is a rather significant difference.

edit: I'm not certain why I got downvoted. The brain is a solid object. If you remove it, it can be done in a way that leaves the rest of the head intact, especially when you factor in magic, but I wouldn't be surprised if it resulted in the head looking like a mess.

The soul, on the other hand, does not have a physical component that we've found, so removing it would not necessarily result in any physical change (excepting the death of the target). Thus, the difference between the physical and the metaphysical object is relevant.

Furthermore, by way of example, if the Killing Curse killed by turning their targets inside out (or immolating them) I would expect them to say that it kills by making their internal organs external (or burning them to death) rather than specifically and explicitly saying that it strikes the soul directly.

Is this clearer?

What were the two fanfics you recommended for their beauty?